How to Install and Uninstall murasaki-mpi Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "murasaki-mpi" package

This guide let you learn how to install murasaki-mpi on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                murasaki-mpi
            
                    
    
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2. Uninstall "murasaki-mpi" package

Please follow the instructions below to uninstall murasaki-mpi on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                murasaki-mpi
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the murasaki-mpi package on Ubuntu 21.10 (Impish Indri)

Package: murasaki-mpi
Architecture: amd64
Version: 1.68.6-12
Priority: optional
Section: universe/science
Source: murasaki
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4239
Depends: murasaki-common, libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-regex1.74.0-icu67, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libopenmpi3 (>= 4.1.0), libstdc++6 (>= 5.2)
Filename: pool/universe/m/murasaki/murasaki-mpi_1.68.6-12_amd64.deb
Size: 651092
MD5sum: 0622e516eb9d16dce1bdc482f3b7cd83
SHA1: 37f118f0bd2c588fa5002ede78e811090e333230
SHA256: cb2ae519f91fbefd08c7ae31ee4fac3a5eee07338999f2b1994819e40ee9a430
SHA512: a5140148120d293baf386cfafff3e52fd885314b2e7cd9c0a366d6875b4a8b00a1cc839c5f994d8ccaaa66a795c9149a4c5bac0eb3194a196b1d801da8d74ef1
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
Description-en: homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
.
This package provides the MPI-enabled binary for murasaki. While this
will speed up operation on multi-processor machines it will slow down
on a single processor.
Description-md5: 84e98b9662e20d838ebe31e69f3bca4b