How to Install and Uninstall murasaki-mpi Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: May 17,2024

1. Install "murasaki-mpi" package

This tutorial shows how to install murasaki-mpi on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                murasaki-mpi
            
                    
    
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2. Uninstall "murasaki-mpi" package

Please follow the steps below to uninstall murasaki-mpi on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                murasaki-mpi
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the murasaki-mpi package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: murasaki-mpi
Priority: optional
Section: universe/science
Installed-Size: 3625
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Source: murasaki
Version: 1.68.6-4build1
Depends: murasaki-common, libboost-filesystem1.58.0, libboost-iostreams1.58.0, libboost-regex1.58.0, libboost-system1.58.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libopenmpi1.10, libstdc++6 (>= 5.2)
Filename: pool/universe/m/murasaki/murasaki-mpi_1.68.6-4build1_amd64.deb
Size: 567528
MD5sum: c93ee2897f5e51650c50ddcc03e8d893
SHA1: 676de5a50132d5e0003f8b8109e1c31755cd20b6
SHA256: bcac15bf26c1417f1af29d70ddf0455bc2457eab7c2be2c7751f409410fc9ecd
Description-en: homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
.
This package provides the MPI-enabled binary for murasaki. While this
will speed up operation on multi-processor machines it will slow down
on a single processor.
Description-md5: 84e98b9662e20d838ebe31e69f3bca4b
Homepage: http://murasaki.dna.bio.keio.ac.jp/wiki/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu