How to Install and Uninstall nanopolish Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 12,2024

1. Install "nanopolish" package

This tutorial shows how to install nanopolish on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                nanopolish
            
                    
    
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2. Uninstall "nanopolish" package

Please follow the steps below to uninstall nanopolish on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                nanopolish
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the nanopolish package on Ubuntu 21.10 (Impish Indri)

Package: nanopolish
Architecture: amd64
Version: 0.13.2-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 9571
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhdf5-103-1, libhts3 (>= 1.10), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), python3:any, perl:any
Recommends: python3-biopython, python3-pysam
Suggests: perl, make
Filename: pool/universe/n/nanopolish/nanopolish_0.13.2-3_amd64.deb
Size: 2253740
MD5sum: 730120eec0344064c55b98faa12fca89
SHA1: 8b7803d15ed9ffd36dd5d83c8a3b963a1a612fe8
SHA256: 704a02631d2901efdde001864870b02ed9730362c9abc3e499b97d4811925ba1
SHA512: 3e25b409844bc8fdef583defb4b1d4c8b0a2788808f24e2edd7f301d9b92cd00841c9bfbef0551d71f4d08f14c1e04a607e52bf53eddefef627bf478b3612162
Homepage: https://github.com/jts/nanopolish
Description-en: consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling
of nanopore genome sequencing data. It can perform signal-level analysis
of Oxford Nanopore sequencing data. Nanopolish can calculate an improved
consensus sequence for a draft genome assembly, detect base
modifications, call SNPs and indels with respect to a reference genome
and more.
Description-md5: c65181cb6cafc3c3d9c0c69affe72640