How to Install and Uninstall plasmidseeker Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 23,2024

1. Install "plasmidseeker" package

Please follow the guidelines below to install plasmidseeker on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                plasmidseeker
            
                    
    
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2. Uninstall "plasmidseeker" package

Learn how to uninstall plasmidseeker on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                plasmidseeker
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the plasmidseeker package on Ubuntu 21.10 (Impish Indri)

Package: plasmidseeker
Architecture: amd64
Version: 1.3+dfsg-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 94
Depends: genometester
Filename: pool/universe/p/plasmidseeker/plasmidseeker_1.3+dfsg-1_amd64.deb
Size: 27124
MD5sum: 6cfda2cb832616041220b5f02e7731e9
SHA1: e1656023adb9c70d4ce26794200922462bbf59c0
SHA256: 0d72b42628cb382391324423ca02d987246a5212af8237369755fc6b8c548c91
SHA512: 02c2906bce4c9bdb7df521e7f3e310d763dfdc96c33e0fc391de53945ad578a125507ac16936dcd7fca5401f1bee257f4f46837a36b71bf7d802d8340190ad42
Homepage: https://github.com/bioinfo-ut/PlasmidSeeker
Description-en: identification of known plasmids from whole-genome sequencing reads
PlasmidSeeker is a k-mer based program for the identification of known
plasmids from bacterial whole genome sequencing reads.
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PlasmidSeeker that enables the detection of plasmids from bacterial WGS
data without read assembly. The PlasmidSeeker algorithm is based on
k-mers and uses k-mer abundance to distinguish between plasmid and
bacterial sequences. The performance of PlasmidSeeker was tested on a set
of simulated and real bacterial WGS samples, resulting in 100%
sensitivity and 99.98% specificity.
Description-md5: 1cea96a215922032ad64a51b1d06004d