How to Install and Uninstall profbval Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "profbval" package

In this section, we are going to explain the necessary steps to install profbval on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                profbval
            
                    
    
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2. Uninstall "profbval" package

This is a short guide on how to uninstall profbval on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                profbval
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the profbval package on Ubuntu 21.10 (Impish Indri)

Package: profbval
Architecture: all
Version: 1.0.22-7
Priority: extra
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 262
Depends: perl:any, profnet-bval
Recommends: blast2, librg-utils-perl, profphd
Suggests: pp-popularity-contest
Filename: pool/universe/p/profbval/profbval_1.0.22-7_all.deb
Size: 59088
MD5sum: d5ad53276ff29da8ea9263fe36815fa6
SHA1: d9678a0ffa03fed395b9417b2e51f0c39e5226a0
SHA256: 58b2d25bc2aa8fcc3ad1ec730f086e48c97eba868fdd95f7f21cddf138a95974
SHA512: 08f83435a9dee7e856cb722e4aceb5a337cb469ca87f4a6f77740cf86db040462a8c63bd7875897b117d31acecbf8590cf2b052076e45cd72567fa1adf3de53f
Homepage: https://www.rostlab.org/owiki/index.php/PROFbval
Description-en: predictor of flexible/rigid protein residues from sequence
PROFbval can be useful for both protein structure and
function predictions. For instance, a biologist can locate potentially
antigenic determinants by identifying the most flexible residues on the
protein surface. Additionally, a crystallographer can locate residues that
potentially have high experimental B-values.
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PROFbval takes the following input, further described on profbval(1):
* a protein sequence in a FASTA file
* secondary structure and solvent accessibility prediction by prof(1)
* an HSSP file
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Background: the mobility of a given residue on the protein surface is related
to its functional role.
Therefore, identification of extremely rigid or flexible
residues on the protein surface is helpful for identifying functionally
important residues in proteins. A common measure of atom mobility in proteins
is B-value data from x-ray crystallography structures. PROFbval is the first
tool to predict normalized backbone B-values from amino-acid sequence.
Description-md5: 7c39db9af750c32242cf98d34c9f3c4c