How to Install and Uninstall profbval Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 22,2024

1. Install "profbval" package

Please follow the steps below to install profbval on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                profbval
            
                    
    
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2. Uninstall "profbval" package

Please follow the guidance below to uninstall profbval on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                profbval
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the profbval package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: profbval
Priority: extra
Section: universe/science
Installed-Size: 254
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 1.0.22-2
Depends: perl, profnet-bval
Recommends: blast2, librg-utils-perl, pp-popularity-contest, profphd
Filename: pool/universe/p/profbval/profbval_1.0.22-2_all.deb
Size: 57726
MD5sum: 3b825ae4a744ae3557ba6b7693b8a202
SHA1: f9fb9affe54c825ddafd31aa088f7c80c90419cb
SHA256: 9c13880331ae6efc22f71aafd72da0d95487ebfdf33a3f978e9f53b08570818c
Description-en: predictor of flexible/rigid protein residues from sequence
PROFbval can be useful for both protein structure and
function predictions. For instance, a biologist can locate potentially
antigenic determinants by identifying the most flexible residues on the
protein surface. Additionally, a crystallographer can locate residues that
potentially have high experimental B-values.
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PROFbval takes the following input, further described on profbval(1):
* a protein sequence in a FASTA file
* secondary structure and solvent accessibility prediction by prof(1)
* an HSSP file
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Background: the mobility of a given residue on the protein surface is related
to its functional role.
Therefore, identification of extremely rigid or flexible
residues on the protein surface is helpful for identifying functionally
important residues in proteins. A common measure of atom mobility in proteins
is B-value data from x-ray crystallography structures. PROFbval is the first
tool to predict normalized backbone B-values from amino-acid sequence.
Description-md5: 7c39db9af750c32242cf98d34c9f3c4c
Homepage: https://www.rostlab.org/owiki/index.php/PROFbval
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu