How to Install and Uninstall pscan-tfbs Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 22,2024

1. Install "pscan-tfbs" package

Here is a brief guide to show you how to install pscan-tfbs on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                pscan-tfbs
            
                    
    
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2. Uninstall "pscan-tfbs" package

This guide let you learn how to uninstall pscan-tfbs on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                pscan-tfbs
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the pscan-tfbs package on Ubuntu 21.10 (Impish Indri)

Package: pscan-tfbs
Architecture: amd64
Version: 1.2.2-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 192
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libgsl25 (>= 2.6), libstdc++6 (>= 9)
Filename: pool/universe/p/pscan-tfbs/pscan-tfbs_1.2.2-4_amd64.deb
Size: 72056
MD5sum: e4e96f3aaf1dfea851fe5d3e6340334a
SHA1: 9254b6a8e61d15df137d27875016bd977b2bdb56
SHA256: cf0d4383f05d799333f72f776747cc317a09c7cb07fedc2ed795d23481cc2942
SHA512: 8882cce697d0bd466747a12ac0a178d08637f8c63d50c956b9c568035ead30023feb3864ae5a7de4d36fd7c746da14364db8e4b31ed88cc7d4a4268f05548e79
Homepage: http://www.beaconlab.it/pscan
Description-en: search for transcription factor binding sites
Pscan finds Over-represented Transcription Factor Binding Site Motifs in
Sequences from Co-Regulated or Co-Expressed Genes.
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Pscan is a software tool that scans a set of sequences (e.g. promoters)
from co-regulated or co-expressed genes with motifs describing the
binding specificity of known transcription factors and assesses which
motifs are significantly over- or under-represented, providing thus
hints on which transcription factors could be common regulators of the
genes studied, together with the location of their candidate binding
sites in the sequences. Pscan does not resort to comparisons with
orthologous sequences and experimental results show that it compares
favorably to other tools for the same task in terms of false positive
predictions and computation time. The website is free and open to all
users and there is no login requirement.
Description-md5: d8a47e90451f258aae8a4632a748f9ef