How to Install and Uninstall python3-gfapy Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 02,2024

1. Install "python3-gfapy" package

Please follow the guidance below to install python3-gfapy on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                python3-gfapy
            
                    
    
    Copied

2. Uninstall "python3-gfapy" package

Please follow the steps below to uninstall python3-gfapy on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                python3-gfapy
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the python3-gfapy package on Ubuntu 21.10 (Impish Indri)

Package: python3-gfapy
Architecture: amd64
Version: 1.1.0+dfsg-1build1
Priority: optional
Section: universe/science
Source: gfapy
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 487
Depends: python3:any
Filename: pool/universe/g/gfapy/python3-gfapy_1.1.0+dfsg-1build1_amd64.deb
Size: 75572
MD5sum: d4044ffb22eb3d5327da7760fcef2a4c
SHA1: 69a962164411a03373724ef527e4a64e539b82d9
SHA256: e466fb44c57ea7bfb1880e8c99d15df95253115c8255669da9a648eea9c91909
SHA512: 8a1a2f05a68fb3d8d4f8d7bc4b7f2b1fdca07f98f4d93f84c726868fcfd159063ea3ece7cf3bc521a855045abcee58d16c969c22d071a2c66b8b3863185144ab
Homepage: https://github.com/ggonnella/gfapy
Description-en: flexible and extensible software library for handling sequence graphs
The Graphical Fragment Assembly (GFA) are formats for the representation of
sequence graphs, including assembly, variation and splicing graphs. Two
versions of GFA have been defined (GFA1 and GFA2) and several sequence
analysis programs have been adopting the formats as an interchange format,
which allow the user to easily combine different sequence analysis tools.
.
This library implements the GFA1 and GFA2 specification. It is possible to
create a Gfa object from a file in the GFA format or from scratch, to
enumerate the graph elements (segments, links, containments, paths and header
lines), to traverse the graph (by traversing all links outgoing from or
incoming to a segment), to search for elements (e.g. which links connect two
segments) and to manipulate the graph (e.g. to eliminate a link or a segment
or to duplicate a segment distributing the read counts evenly on the copies).
.
The GFA format can be easily extended by users by defining own custom tags
and record types. In Gfapy, it is easy to write extensions modules, which
allow one to define custom record types and datatypes for the parsing and
validation of custom fields. The custom lines can be connected, using
references, to each other and to lines of the standard record types.
Description-md5: f2ce45a3b8a978e1b20d18febb3bd7ab