How to Install and Uninstall python3-pairix Package on Ubuntu 21.10 (Impish Indri)

Last updated: January 11,2025

1. Install "python3-pairix" package

This guide let you learn how to install python3-pairix on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                python3-pairix
            
                    
    
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2. Uninstall "python3-pairix" package

Learn how to uninstall python3-pairix on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                python3-pairix
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-pairix package on Ubuntu 21.10 (Impish Indri)

Package: python3-pairix
Architecture: amd64
Version: 0.3.7-3build1
Priority: optional
Section: universe/python
Source: python-pairix
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 116
Depends: python3 (<< 3.10), python3 (>= 3.9~)
Filename: pool/universe/p/python-pairix/python3-pairix_0.3.7-3build1_amd64.deb
Size: 40792
MD5sum: 5b9d18f3eed7eccc6018a534ecd6d272
SHA1: 7cb51c961a3a2bd10b94abc9b36e92ba20bc0563
SHA256: 722874d2ebe249d2b5b4b7878533ea3863d0fd435be33b0dfac4fd8a335fbb33
SHA512: 7c1b3d9971dfb506602dc9de2aacdc2bec2d690e8ccdc4f03798495792dff97464cad3bb017b278d1c509454e60203c3a1abdc9c2220d2de3975b418d271445b
Homepage: https://github.com/4dn-dcic/pairix
Description-en: 1D/2D indexing and querying with a pair of genomic coordinates
Pairix is a tool for indexing and querying on a block-compressed text
file containing pairs of genomic coordinates.
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Pairix is a stand-alone C program that was written on top of tabix as a
tool for the 4DN-standard pairs file format describing Hi-C data:
pairs_format_specification.md
.
However, Pairix can be used as a generic tool for indexing and querying
any bgzipped text file containing genomic coordinates, for either 2D- or
1D- indexing and querying.
.
For example: given the custom text file below, you want to extract
specific lines from the Pairs file further below. An awk command would
read the Pairs file from beginning to end. Pairix creates an index and
uses it to access the file from a relevant position by taking advantage
of bgzf compression, allowing for a fast query on large files.
Description-md5: f90d0b5d526e819b782841938acb11e8