How to Install and Uninstall pyvcf Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 26,2024

1. Install "pyvcf" package

This is a short guide on how to install pyvcf on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                pyvcf
            
                    
    
    Copied

2. Uninstall "pyvcf" package

This guide covers the steps necessary to uninstall pyvcf on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                pyvcf
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the pyvcf package on Ubuntu 21.10 (Impish Indri)

Package: pyvcf
Architecture: all
Version: 0.6.8+git20170215.476169c-7build2
Priority: optional
Section: universe/python
Source: python-pyvcf
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 27
Depends: python3:any, python3-vcf
Filename: pool/universe/p/python-pyvcf/pyvcf_0.6.8+git20170215.476169c-7build2_all.deb
Size: 7652
MD5sum: 358eea55b5da200ac1198326fe0d6770
SHA1: 750d082082ab99b61bfb8e2ac0aae0a09c6b83d0
SHA256: 13798e1688a34a45a3051023652e5d92b9278b2dc9a63b6bf762d1761937e9b4
SHA512: 27942217e3e58548d918a23c7451f7316a3eba3ee56d068222716ce0feac6d075fb6541deda94d2d686b93a994094ce8beb1c91ddded41321af3d5cb54eac8ba
Homepage: https://pypi.python.org/pypi/PyVCF
Description-en: helper scripts for Variant Call Format (VCF) parser
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides helper scripts using python3-pyvcf.
Description-md5: b7ae834ad458cf6b0fc07cbe2d8daaca