How to Install and Uninstall qcumber Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "qcumber" package

Please follow the instructions below to install qcumber on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                qcumber
            
                    
    
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2. Uninstall "qcumber" package

Please follow the instructions below to uninstall qcumber on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                qcumber
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the qcumber package on Ubuntu 21.10 (Impish Indri)

Package: qcumber
Architecture: all
Version: 2.3.0-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 234
Provides: qc-pipeline
Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake
Conflicts: qc-pipeline
Replaces: qc-pipeline
Filename: pool/universe/q/qcumber/qcumber_2.3.0-2_all.deb
Size: 49420
MD5sum: 8a7460b7ed3fed0d3fb3fffc56ca4e64
SHA1: d77f48a3e294d9473174869907c85f227e276872
SHA256: 13901163d56cfa462f78a9c8b819ffab86530596830ff80406625b3cbf447ba3
SHA512: c9b939624f5f33fd34ad26bfe8d36b9deed26ab5bc8bea2396a4bac859cbfbb1d857bf930af3552aebd875e91388b77275c1c38e0f0092988bc23c3b4dd82d32
Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber
Description-en: quality control of genomic sequences
QCPipeline is a tool for quality control. The workflow is as follows:
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1. Quality control with FastQC
2. Trim Reads with Trimmomatic
3. Quality control of trimmed reads with FastQC
4. Map reads against reference using bowtie2
5. Classify reads with Kraken
Description-md5: 380ba80499911de0a248a18cb1009872