How to Install and Uninstall r-bioc-dexseq Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 23,2024

1. Install "r-bioc-dexseq" package

This guide covers the steps necessary to install r-bioc-dexseq on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-bioc-dexseq
            
                    
    
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2. Uninstall "r-bioc-dexseq" package

This guide let you learn how to uninstall r-bioc-dexseq on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-bioc-dexseq
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-bioc-dexseq package on Ubuntu 21.10 (Impish Indri)

Package: r-bioc-dexseq
Architecture: all
Version: 1.36.0+dfsg-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 665
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-biocparallel, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-iranges (>= 2.5.17), r-bioc-genomicranges (>= 1.23.7), r-bioc-deseq2 (>= 1.9.11), r-bioc-annotationdbi, r-cran-rcolorbrewer, r-bioc-s4vectors (>= 0.23.18), r-bioc-biocgenerics, r-bioc-biomart, r-cran-hwriter, r-cran-stringr, r-bioc-rsamtools, r-cran-statmod, r-bioc-geneplotter, r-bioc-genefilter
Suggests: r-bioc-genomicfeatures (>= 1.13.29), r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Filename: pool/universe/r/r-bioc-dexseq/r-bioc-dexseq_1.36.0+dfsg-1_all.deb
Size: 449216
MD5sum: 3b3007864cbe80bc5dfc050f8d443b41
SHA1: 5cfbaa13c8179743cff58e42fc8faeab6bbd562f
SHA256: 8aab21162b66c0ca3ec2aa859a2ecf358d820f83f9be16de3b6ddf97057c82fb
SHA512: 4ef06d4664c8af0745b4d6f66ae13c1fbc2bb4caedefd959c4f76d8074b59c1b94f8e625387fcce8877e6ae6449ab5e85008e7819f92fa92a348484a2d800400
Homepage: https://bioconductor.org/packages/DEXSeq/
Description-en: GNU R inference of differential exon usage in RNA-Seq
The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.
Description-md5: 847e73dca66539e0fca1ea31c4fc3b84