How to Install and Uninstall ragout-examples Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 19,2024

1. Install "ragout-examples" package

This guide covers the steps necessary to install ragout-examples on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                ragout-examples
            
                    
    
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2. Uninstall "ragout-examples" package

This guide covers the steps necessary to uninstall ragout-examples on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                ragout-examples
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ragout-examples package on Ubuntu 21.10 (Impish Indri)

Package: ragout-examples
Architecture: all
Version: 2.3-2build1
Priority: optional
Section: universe/science
Source: ragout
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 18024
Filename: pool/universe/r/ragout/ragout-examples_2.3-2build1_all.deb
Size: 18434268
MD5sum: 21db08ab9a48fa57a96cc296207b56ac
SHA1: 795ef6d179a62bd5a4bc6e6089cecf0e06fda6d3
SHA256: 95ae7647663c28be7bfa887faa3252b7c7e1809d7bc723f5a8b5c9764b40275e
SHA512: 13f3190efa8dab25a8b626226510543f31a93cb2288cc70461e97ddb3bc0d15a8bb0170d71fa090b9d6677a3bfba55568c45e973dd5f88f6d5583a67f5988663
Homepage: https://github.com/fenderglass/Ragout/
Description-en: Reference-Assisted Genome Ordering UTility (example data)
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for
chromosome-level scaffolding using multiple references. Given initial
assembly fragments (contigs/scaffolds) and one or multiple related
references (complete or draft), it produces a chromosome-scale assembly
(as a set of scaffolds).
.
The approach is based on the analysis of genome rearrangements (like
inversions or chromosomal translocations) between the input genomes and
reconstructing the most parsimonious structure of the target genome.
.
Ragout now supports both small and large genomes (of mammalian scale
and complexity). The assembly of highly polymorphic genomes is
currently limited.
.
This package contains example data to test ragout.
Description-md5: 3acd8375d948d70dceeaf4b5e8dd98bb