How to Install and Uninstall ragout Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 18,2024

1. Install "ragout" package

Please follow the step by step instructions below to install ragout on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                ragout
            
                    
    
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2. Uninstall "ragout" package

This is a short guide on how to uninstall ragout on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                ragout
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the ragout package on Ubuntu 21.10 (Impish Indri)

Package: ragout
Architecture: amd64
Version: 2.3-2build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 9691
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), python3:any, python3-networkx (>= 2.2)
Recommends: sibelia
Filename: pool/universe/r/ragout/ragout_2.3-2build1_amd64.deb
Size: 2125576
MD5sum: e837c70936c0d18f53e68ab9dec5e454
SHA1: db2cb5780eb51b04c40871c0c98314e1e6a1133d
SHA256: 57cad42bcd989920329792cd69dd9e656728b466d7280a414a4ae8f90a49c01f
SHA512: c3c535745c108b7e33b9ec315fd1939d3ce8feca5dcb5bd28e7be3f33f6182b344b738b63835ed04b9e15569e8cc8ba877caee9bfbfdc6a243534d5deea995cc
Homepage: https://github.com/fenderglass/Ragout/
Description-en: Reference-Assisted Genome Ordering UTility
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for
chromosome-level scaffolding using multiple references. Given initial
assembly fragments (contigs/scaffolds) and one or multiple related
references (complete or draft), it produces a chromosome-scale assembly
(as a set of scaffolds).
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The approach is based on the analysis of genome rearrangements (like
inversions or chromosomal translocations) between the input genomes and
reconstructing the most parsimonious structure of the target genome.
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Ragout now supports both small and large genomes (of mammalian scale
and complexity). The assembly of highly polymorphic genomes is
currently limited.
Description-md5: 8f0c7441aed2bf02da71eefce4a282fe