How to Install and Uninstall roary Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 25,2024

1. Install "roary" package

This is a short guide on how to install roary on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                roary
            
                    
    
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2. Uninstall "roary" package

Please follow the step by step instructions below to uninstall roary on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                roary
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the roary package on Ubuntu 21.10 (Impish Indri)

Package: roary
Architecture: all
Version: 3.13.0+dfsg-1
Priority: extra
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 659
Depends: perl, bioperl (>= 1.7.4), libarray-utils-perl, libdigest-md5-file-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree
Filename: pool/universe/r/roary/roary_3.13.0+dfsg-1_all.deb
Size: 172136
MD5sum: c91fc8371533ccbb9a205261366ecf98
SHA1: 720d38cc96d8fbb5fc6df0df26660046b0f466fc
SHA256: 96ef9dd9f59ab16d55802e49131a4a1927a2e024561c7505636ba94a4f244377
SHA512: 5f7d1dcd84f164fb3ca67b80f13310d99b1832c2991cb41bfb39c6860c18df7e38316c5f1141bc02026b01b331547b8b474be193885638067f8d31a83299d4d9
Homepage: http://sanger-pathogens.github.io/Roary/
Description-en: high speed stand alone pan genome pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated
assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates
the pan genome. Using a standard desktop PC, it can analyse datasets with
thousands of samples, something which is computationally infeasible with
existing methods, without compromising the quality of the results. 128 samples
can be analysed in under 1 hour using 1 GB of RAM and a single processor.
To perform this analysis using existing methods would take weeks and hundreds
of GB of RAM. Roary is not intended for meta-genomics or for comparing
extremely diverse sets of genomes.
Description-md5: 6d457fd706202fc2ef292eacf7b46029