How to Install and Uninstall roary Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: April 29,2024

1. Install "roary" package

Here is a brief guide to show you how to install roary on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                roary
            
                    
    
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2. Uninstall "roary" package

Please follow the guidance below to uninstall roary on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                roary
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the roary package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: roary
Priority: extra
Section: universe/science
Installed-Size: 621
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 3.6.0+dfsg-4
Depends: perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree
Filename: pool/universe/r/roary/roary_3.6.0+dfsg-4_all.deb
Size: 165954
MD5sum: e8eea870838175623f2f6dd941392dfa
SHA1: 282b9217b87177174b346a81ef7f54c5ae54ee61
SHA256: 1e555ce286b266196f1bf0cba365910689ecaf1071787d5ccca3ca659b7f051e
Description-en: high speed stand alone pan genome pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated
assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates
the pan genome. Using a standard desktop PC, it can analyse datasets with
thousands of samples, something which is computationally infeasible with
existing methods, without compromising the quality of the results. 128 samples
can be analysed in under 1 hour using 1 GB of RAM and a single processor.
To perform this analysis using existing methods would take weeks and hundreds
of GB of RAM. Roary is not intended for meta-genomics or for comparing
extremely diverse sets of genomes.
Description-md5: 6d457fd706202fc2ef292eacf7b46029
Homepage: http://sanger-pathogens.github.io/Roary/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu