How to Install and Uninstall samblaster Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 22,2024

1. Install "samblaster" package

This tutorial shows how to install samblaster on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                samblaster
            
                    
    
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2. Uninstall "samblaster" package

This is a short guide on how to uninstall samblaster on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                samblaster
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the samblaster package on Ubuntu 21.10 (Impish Indri)

Package: samblaster
Architecture: amd64
Version: 0.1.26-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 70
Depends: libc6 (>= 2.14), libstdc++6 (>= 5)
Filename: pool/universe/s/samblaster/samblaster_0.1.26-1_amd64.deb
Size: 26612
MD5sum: abb2ab36aa9369a27051ceb0467fff05
SHA1: 73230e77c0c426a22c1e6c81fe028d89247b4ceb
SHA256: e3d59387e82a7a2e5b4f37d466ca74dcc57e350bd262669dea548efc80d6ce2a
SHA512: 45c561e468ab01ab5b8809c2d6511dfd81485c8ebee8db9d57c18f70c643adcd6e60eb83cb15670ceac4e13b9f593cf8e9a7cbda954fc4afd9124298d624d7dc
Homepage: https://github.com/GregoryFaust/samblaster
Description-en: marks duplicates, extracts discordant/split reads
Current "next-generation" sequencing technologies cannot tell what
exact sequence they will be reading. They take what is available. And
if some sequences are read very often, then this needs some extra
biomedical thinking. The genome could for instance be duplicated.
.
samblaster is a fast and flexible program for marking duplicates in
read-id grouped paired-end SAM files. It can also optionally output
discordant read pairs and/or split read mappings to separate SAM files,
and/or unmapped/clipped reads to a separate FASTQ file. When marking
duplicates, samblaster will require approximately 20MB of memory per
1M read pairs.
Description-md5: 958fdfe979333e62ebf8221991f38db6