How to Install and Uninstall seqprep Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 15,2024

1. Install "seqprep" package

Please follow the steps below to install seqprep on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                seqprep
            
                    
    
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2. Uninstall "seqprep" package

This guide let you learn how to uninstall seqprep on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                seqprep
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the seqprep package on Ubuntu 21.10 (Impish Indri)

Package: seqprep
Architecture: amd64
Version: 1.3.2-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 100
Depends: libc6 (>= 2.4), zlib1g (>= 1:1.1.4)
Filename: pool/universe/s/seqprep/seqprep_1.3.2-5_amd64.deb
Size: 28668
MD5sum: 733dfa356eb38eb0c483b683c73d8ce2
SHA1: f93088e46cf7d6bdfe066e348fa0b47f61f0d795
SHA256: 9fdc8446bd8c2ca1589e7dfdcc2ac743433332f854d02b79a90d6bb7472e5253
SHA512: e20cfe259ef282c759e995250c6149e7e23fda2aade25b8b3874160220057b7ccf227658f0fd984422e5d006c096d44a1a2155a4a9b7bf504244c12eca1876b7
Homepage: http://seqanswers.com/wiki/SeqPrep
Description-en: stripping adaptors and/or merging paired reads of DNA sequences with overlap
SeqPrep is a program to merge paired end Illumina reads that are overlapping
into a single longer read. It may also just be used for its adapter trimming
feature without doing any paired end overlap. When an adapter sequence is
present, that means that the two reads must overlap (in most cases) so they
are forcefully merged. When reads do not have adapter sequence they must be
treated with care when doing the merging, so a much more specific approach is
taken. The default parameters were chosen with specificity in mind, so that
they could be ran on libraries where very few reads are expected to overlap.
It is always safest though to save the overlapping procedure for libraries
where you have some prior knowledge that a significant portion of the reads
will have some overlap.
Description-md5: 4537f101700699f5ea0a49f12901126a