Complete Guide: Installing shovill on Ubuntu 21.10 (Impish Indri) 2024

1. Install "shovill" package

Please follow the steps below to install shovill on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                shovill
            
                    
    
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2. Uninstall "shovill" package

Learn how to uninstall shovill on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                shovill
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the shovill package on Ubuntu 21.10 (Impish Indri)

Package: shovill
Architecture: amd64
Version: 1.1.0-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 39
Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip
Filename: pool/universe/s/shovill/shovill_1.1.0-4_amd64.deb
Size: 12692
MD5sum: c7f71ce07525ce4ab88dd45ac560c01e
SHA1: 8c38ceb28aaaaae51eb668a2cda9f85e9e6c47b1
SHA256: d4a1fa5b1bb3ce80ea323c8b45d4b055940328c4fe33ffeefe81b8bfd91e1cd8
SHA512: 5d5b6a0847a4fc111e2ece01599de68679ef2b418b44df762fa151cde32e3c26b0becce8e93593e7a8cbc0e7b25d3638789e742a8a172ea00335b55e73b5cdbc
Homepage: https://github.com/tseemann/shovill
Description-en: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core,
but alters the steps before and after the primary
assembly step to get similar results in less time.
Shovill also supports other assemblers like SKESA,
Velvet and Megahit, so you can take advantage of the
pre- and post-processing the Shovill provides
with those too.
Description-md5: 8695f2fc2647e597d0b8f3983a621eea