Complete Guide: Installing shovill on Ubuntu 20.10 (Groovy Gorilla) 2024

1. Install "shovill" package

This tutorial shows how to install shovill on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                shovill
            
                    
    
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2. Uninstall "shovill" package

Please follow the instructions below to uninstall shovill on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                shovill
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the shovill package on Ubuntu 20.10 (Groovy Gorilla)

Package: shovill
Architecture: all
Version: 1.1.0-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 39
Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip
Filename: pool/universe/s/shovill/shovill_1.1.0-3_all.deb
Size: 12552
MD5sum: cdd78e33be61d1f406dbfb1b1df0cf7d
SHA1: b2ca3d9a69e33e43e6e8ce83240c1a2e8a75f0e5
SHA256: b5c036bca711486a303335ecbaaabf883bf7856b7c3180e6e57be20872aefed2
SHA512: c32d2d106f5109056dc2be976a2400200b19b4389f0c50422bd23e8127d7a67e08c9b11b87d119ee6f8c01c4f431358165bdb4e4f38716aacb7c0de8c31d6e33
Homepage: https://github.com/tseemann/shovill
Description-en: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core,
but alters the steps before and after the primary
assembly step to get similar results in less time.
Shovill also supports other assemblers like SKESA,
Velvet and Megahit, so you can take advantage of the
pre- and post-processing the Shovill provides
with those too.
Description-md5: 8695f2fc2647e597d0b8f3983a621eea