How to Install and Uninstall soapaligner Package on Ubuntu 21.10 (Impish Indri)

Last updated: April 20,2024

1. Install "soapaligner" package

Here is a brief guide to show you how to install soapaligner on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                soapaligner
            
                    
    
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2. Uninstall "soapaligner" package

Please follow the step by step instructions below to uninstall soapaligner on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                soapaligner
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the soapaligner package on Ubuntu 21.10 (Impish Indri)

Package: soapaligner
Architecture: amd64
Version: 2.20-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 124
Depends: libc6 (>= 2.14)
Filename: pool/universe/s/soapaligner/soapaligner_2.20-5_amd64.deb
Size: 52088
MD5sum: 475accebfe28e615beff7cd91774f25e
SHA1: 5214b10cc411dd205f34e9f31f917170e3fd56e1
SHA256: a113334f04cb35630b484b7cb29be81d55f036ccc125ea3d8fd844c012581d46
SHA512: 0f76214b1a084a9549049727f9e8c46e20c39c4edc53335fc06bc57547d975b4de415aa7b4e258c9c179b5f50c2a662f6e492bc80e476a64f43544ae140d40a9
Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html
Description-en: aligner of short reads of next generation sequencers
This package addresses a common problem in bioinformatics that has
become routine now also in clinical research: the assembly and
comparison of the very long genomic DNA sequences from many
short reads that the machines provide.
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SOAPaligner/soap2 is a member of the Short Oligonucleotide Analysis
Package (SOAP) and an updated version of SOAP software for short
oligonucleotide alignment (soap v1). The new program features in super
fast and accurate alignment for huge amounts of short reads generated by
Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order
of magnitude faster. It require only 2 minutes aligning one million
single-end reads onto the human reference genome. Another remarkable
improvement of SOAPaligner is that it now supports a wide range of the
read length.
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SOAPaligner/soap2 benefitted in time and space efficiency by a revolution
in the basic data structures and algorithms used. The core algorithms and
the indexing data structures (2way-BWT) are developed by the algorithms
research group of the Department of Computer Science, the University
of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu).
Description-md5: 995fc07701a7a25549ee980d96595040