How to Install and Uninstall soapaligner Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 26,2024

1. Install "soapaligner" package

This is a short guide on how to install soapaligner on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                soapaligner
            
                    
    
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2. Uninstall "soapaligner" package

This guide covers the steps necessary to uninstall soapaligner on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                soapaligner
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the soapaligner package on Ubuntu 20.10 (Groovy Gorilla)

Package: soapaligner
Architecture: amd64
Version: 2.20-4
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 123
Depends: libc6 (>= 2.14)
Filename: pool/universe/s/soapaligner/soapaligner_2.20-4_amd64.deb
Size: 51048
MD5sum: 4c210a157c657a0bd7fb7446c1b5164e
SHA1: 537bc1bbc338e2f37c68f0fa8afcd374df258db9
SHA256: a09afa8799e1ad34ba9f9b63c71328db4067ad1a41d232b87a0b5a93e640d97d
SHA512: cc576869902c12aeb3ec495843d1e4bd8398d4c06f8ff5956ec22dfe2cef7da60ada90e40f784665d17812de344396e38c24127f9ffafed8d143c34b83d0bac9
Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html
Description-en: aligner of short reads of next generation sequencers
This package addresses a common problem in bioinformatics that has
become routine now also in clinical research: the assembly and
comparison of the very long genomic DNA sequences from many
short reads that the machines provide.
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SOAPaligner/soap2 is a member of the Short Oligonucleotide Analysis
Package (SOAP) and an updated version of SOAP software for short
oligonucleotide alignment (soap v1). The new program features in super
fast and accurate alignment for huge amounts of short reads generated by
Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order
of magnitude faster. It require only 2 minutes aligning one million
single-end reads onto the human reference genome. Another remarkable
improvement of SOAPaligner is that it now supports a wide range of the
read length.
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SOAPaligner/soap2 benefitted in time and space efficiency by a revolution
in the basic data structures and algorithms used. The core algorithms and
the indexing data structures (2way-BWT) are developed by the algorithms
research group of the Department of Computer Science, the University
of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu).
Description-md5: 995fc07701a7a25549ee980d96595040