How to Install and Uninstall sortmerna Package on Ubuntu 21.10 (Impish Indri)

Last updated: October 06,2024

1. Install "sortmerna" package

Learn how to install sortmerna on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                sortmerna
            
                    
    
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2. Uninstall "sortmerna" package

Here is a brief guide to show you how to uninstall sortmerna on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                sortmerna
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the sortmerna package on Ubuntu 21.10 (Impish Indri)

Package: sortmerna
Architecture: amd64
Version: 2.1-5
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 47233
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 5.2)
Recommends: python3
Filename: pool/universe/s/sortmerna/sortmerna_2.1-5_amd64.deb
Size: 5464708
MD5sum: f5c219bb9157c2790a2520cf5097b495
SHA1: 5412475658450f9d7a8705dabc76d492c3176e6e
SHA256: ec7fd86da6e6b62f5c5a5e931df7670c1027b6a94517cea668758210c7627f92
SHA512: 713c34811b4d3cb5b6292704e4a8a5caec9a08939f5464f64da4b7f72cfb3b17375c972749a0aba85b6cd5e5b6ca6c1e29adbbfef3a4112bf0e5100d8009c276
Homepage: https://bioinfo.lifl.fr/RNA/sortmerna/
Description-en: tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and
OTU-picking NGS reads. The core algorithm is based on approximate seeds and
allows for fast and sensitive analyses of nucleotide sequences. The main
application of SortMeRNA is filtering rRNA from metatranscriptomic data.
Additional applications include OTU-picking and taxonomy assignation available
through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1).
SortMeRNA takes as input a file of reads (fasta or fastq format) and one or
multiple rRNA database file(s), and sorts apart rRNA and rejected reads into
two files specified by the user. Optionally, it can provide high quality local
alignments of rRNA reads against the rRNA database. SortMeRNA works with
Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and
BLAST-like alignments.
Description-md5: 785b2b1a824d6d755aab646a5806eba7