How to Install and Uninstall sortmerna Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: October 06,2024

1. Install "sortmerna" package

This tutorial shows how to install sortmerna on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                sortmerna
            
                    
    
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2. Uninstall "sortmerna" package

Please follow the instructions below to uninstall sortmerna on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                sortmerna
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the sortmerna package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: sortmerna
Priority: optional
Section: universe/science
Installed-Size: 988
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 2.0-1
Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libgomp1 (>= 4.9), libstdc++6 (>= 5.2)
Recommends: python
Filename: pool/universe/s/sortmerna/sortmerna_2.0-1_amd64.deb
Size: 532648
MD5sum: 68c3fa461104e1f84cbfbc2029cfd6f9
SHA1: 7b7e7157c268f171dedf788c47eb137fbb04cf3e
SHA256: ddfa7f868a6488c2ea8c36d33951888ad6b02874f4449038c76703fd9237e7b4
Description-en: tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and
OTU-picking NGS reads. The core algorithm is based on approximate seeds and
allows for fast and sensitive analyses of nucleotide sequences. The main
application of SortMeRNA is filtering rRNA from metatranscriptomic data.
Additional applications include OTU-picking and taxonomy assignation available
through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1).
SortMeRNA takes as input a file of reads (fasta or fastq format) and one or
multiple rRNA database file(s), and sorts apart rRNA and rejected reads into
two files specified by the user. Optionally, it can provide high quality local
alignments of rRNA reads against the rRNA database. SortMeRNA works with
Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and
BLAST-like alignments.
Description-md5: 785b2b1a824d6d755aab646a5806eba7
Homepage: http://bioinfo.lifl.fr/RNA/sortmerna/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu