How to Install and Uninstall spaln Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 22,2024

1. Install "spaln" package

Here is a brief guide to show you how to install spaln on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                spaln
            
                    
    
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2. Uninstall "spaln" package

Please follow the step by step instructions below to uninstall spaln on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                spaln
            
                    
    
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            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the spaln package on Ubuntu 21.10 (Impish Indri)

Package: spaln
Architecture: amd64
Version: 2.4.1+dfsg-3
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 836
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5), zlib1g (>= 1:1.2.0.2), spaln-data
Filename: pool/universe/s/spaln/spaln_2.4.1+dfsg-3_amd64.deb
Size: 346868
MD5sum: 7483e6210709d4ddfa324354332e0e55
SHA1: 24c9766c1679d64174aada6b95a6c81901ab0c0b
SHA256: 53955db381fb2390e8473730906cc75107722b7dba1289a072f11cc4d4991af8
SHA512: e1be7c1814321f57322fbfb5027b0693ce1b82da987159d8fe7b4b99c50308653cb03d8e07f282ab4537f3e5b91530e5351b9da757b30b1ea4657855086e7766
Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln
Description-en: splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that
maps and aligns a set of cDNA or protein sequences onto a whole genomic
sequence in a single job. It also performs spliced or ordinary alignment
after rapid similarity search against a protein sequence database,
if a genomic segment or an amino acid sequence is given as a query.
.
spaln supports a combination of protein sequence database and a
given genomic segment and performs rapid similarity searches and
(semi-)global alignments of a set of protein sequence queries against
a protein sequence database. Spaln adopts multi-phase heuristics that
makes it possible to perform the job on a conventional personal computer.
Description-md5: 46ffffcd0cbea45e4f5474c068f0310e