How to Install and Uninstall spaln Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: May 20,2024

1. Install "spaln" package

Learn how to install spaln on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                spaln
            
                    
    
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2. Uninstall "spaln" package

Please follow the step by step instructions below to uninstall spaln on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                spaln
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the spaln package on Ubuntu 20.10 (Groovy Gorilla)

Package: spaln
Architecture: amd64
Version: 2.4.0+dfsg-2build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 763
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5), spaln-data
Filename: pool/universe/s/spaln/spaln_2.4.0+dfsg-2build1_amd64.deb
Size: 320208
MD5sum: a42218004c09afd2501a634ae80fcc19
SHA1: 2d83b697a51995033800885131389c56eec32a38
SHA256: 4f3a71b8af77f192543cbb50d02633d85b023302d1603b51ed0ee2bbf97a0a17
SHA512: 6cfbc3016d31bcb2fb0b15c6ba7e2717296e8c381f3a9b562a5f4df639022a2281907e434742210715666cc4eff3e54bc7b7db178ed9bf0dc4db7db1dd43c1e7
Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln
Description-en: splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that
maps and aligns a set of cDNA or protein sequences onto a whole genomic
sequence in a single job. It also performs spliced or ordinary alignment
after rapid similarity search against a protein sequence database,
if a genomic segment or an amino acid sequence is given as a query.
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spaln supports a combination of protein sequence database and a
given genomic segment and performs rapid similarity searches and
(semi-)global alignments of a set of protein sequence queries against
a protein sequence database. Spaln adopts multi-phase heuristics that
makes it possible to perform the job on a conventional personal computer.
Description-md5: 46ffffcd0cbea45e4f5474c068f0310e