Complete Guide: Installing vcfanno on Ubuntu 21.10 (Impish Indri) 2024

1. Install "vcfanno" package

Please follow the guidance below to install vcfanno on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                vcfanno
            
                    
    
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2. Uninstall "vcfanno" package

This tutorial shows how to uninstall vcfanno on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                vcfanno
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the vcfanno package on Ubuntu 21.10 (Impish Indri)

Package: vcfanno
Architecture: amd64
Version: 0.3.2+ds-2
Built-Using: golang-1.15 (= 1.15.2-1ubuntu1), golang-github-biogo-hts (= 1.1.0+dfsg1-2), golang-github-brentp-bix (= 0.0~git20190718.00aa7a7+ds-2), golang-github-brentp-goluaez (= 0.0~git20160116.dd35d08-2), golang-github-brentp-irelate (= 0.0.1+ds-1), golang-github-brentp-vcfgo (= 0.0~git20190824.654ed2e-2), golang-github-klauspost-compress (= 1.10.11-1), golang-github-klauspost-pgzip (= 1.2.1-1), golang-github-pkg-errors (= 0.9.1-1), golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-1), golang-github-yuin-gluare (= 0.0~git20170607.d7c94f1-2), golang-github-yuin-gopher-lua (= 0.0~git20170915.0.eb1c729-4), golang-toml (= 0.3.1-1)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 6780
Depends: libc6 (>= 2.32)
Filename: pool/universe/v/vcfanno/vcfanno_0.3.2+ds-2_amd64.deb
Size: 2149572
MD5sum: 6b10d738f4c317fad7d519449fa2bbe5
SHA1: 87b5fef20e4643e29708927a8494702bc1447e84
SHA256: 05c02cb9cc29b2290c475e0c4c3bc3214d8f933d4ede321af6f0e85b9492ea02
SHA512: b622f89680d2c106a876ac104bf1ff7a82dd824ff03a3d8e580d29b9fb723fac5161e9b7a4b4c78b74627b4669b680958378a47fb988457d0e3677989d5d6b6b
Homepage: https://github.com/brentp/vcfanno
Description-en: annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO
fields from any number of VCFs or BED files. It uses a simple conf file
to allow the user to specify the source annotation files and fields and
how they will be added to the info of the query VCF.
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* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
.
Vcfanno is written in go and it supports custom user-scripts written in
Lua. It can annotate more than 8000 variants per second with 34
annotations from 9 files on a modest laptop and over 30K variants per
second using 12 processes on a server.
Description-md5: e762099ab07ec0feedacd5a15d3514cf