How to Install and Uninstall vienna-rna Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 04,2024

1. Install "vienna-rna" package

In this section, we are going to explain the necessary steps to install vienna-rna on Ubuntu 21.10 (Impish Indri)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                vienna-rna
            
                    
    
    Copied

2. Uninstall "vienna-rna" package

In this section, we are going to explain the necessary steps to uninstall vienna-rna on Ubuntu 21.10 (Impish Indri):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                vienna-rna
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the vienna-rna package on Ubuntu 21.10 (Impish Indri)

Package: vienna-rna
Architecture: amd64
Version: 2.4.17+dfsg-2
Priority: optional
Section: multiverse/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 85282
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libgsl25 (>= 2.6), libmpfr6 (>= 3.1.3), libstdc++6 (>= 5.2)
Recommends: readseq
Filename: pool/multiverse/v/vienna-rna/vienna-rna_2.4.17+dfsg-2_amd64.deb
Size: 2923892
MD5sum: eacdad8d0c77c5e89d93f31b95322cc7
SHA1: c16a70866e2f677ec3268bebf75ba9d390083d8e
SHA256: ec7b616df21f66f0355dcb074cfc3fe9dca69aa62264a8e0934d299710d88be1
SHA512: 90d260d38eb9320c18c2736c2dc6b71b1c37b186258d71b99dabc1c7de65144c8daa3290dc179eb47443b67e89b2e6a6eddb043a904f856835e28ea3c10d7f3a
Homepage: https://www.tbi.univie.ac.at/RNA/
Description-en: RNA sequence analysis
The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures. It is developed and maintained by the group of Ivo Hofacker
in Vienna.
.
RNA secondary structure prediction through energy minimization is the
most used function in the package. It provides three kinds of dynamic
programming algorithms for structure prediction:
* the minimum free energy algorithm of (Zuker & Stiegler 1981) which
yields a single optimal structure,
* the partition function algorithm of (McCaskill 1990) which calculates
base pair probabilities in the thermodynamic ensemble, and the
suboptimal folding algorithm of (Wuchty et.al 1999) which generates
all suboptimal structures within a given energy range of the optimal
energy.
.
For secondary structure comparison, the package contains several
measures of distance (dissimilarities) using either string alignment or
tree-editing (Shapiro & Zhang 1990). Finally, is provided an algorithm
to design sequences with a predefined structure (inverse folding).
The RNAforester package is a tool for aligning RNA secondary structures
and it's user interface integrates to those of the tools of the
Vienna RNA package.
Description-md5: cd4926e923e0b58439a80df654cba8f9