How to Install and Uninstall python3-bcbio Package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Last updated: November 22,2024

Deprecated! Installation of this package may no longer be supported.

You can also install and uninstall the python3-bcbio on the following distributions in the same way, as they are all based on the Ubuntu system

Kubuntu 22.04 LTS
Lubuntu 22.04 LTS
Xubuntu 22.04 LTS
Ubuntu MATE 22.04 LTS
Ubuntu Studio 22.04 LTS
Pop!_OS 22.04 LTS
Zorin OS 16 / Zorin OS 17
Ubuntu Budgie 22.04

1. Install "python3-bcbio" package

In this section, we are going to explain the necessary steps to install python3-bcbio on Ubuntu 22.04 LTS (Jammy Jellyfish)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                python3-bcbio
            
                    
    
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2. Uninstall "python3-bcbio" package

Please follow the guidance below to uninstall python3-bcbio on Ubuntu 22.04 LTS (Jammy Jellyfish):


    
        
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                sudo apt remove
            
                        
                python3-bcbio
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the python3-bcbio package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Package: python3-bcbio
Architecture: all
Version: 1.2.5-1
Priority: optional
Section: multiverse/science
Source: bcbio
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4817
Depends: python3:any, python3-biopython, python3-cyvcf2, python3-joblib, python3-logbook, python3-matplotlib, python3-psutil, python3-pysam, python3-requests, python3-scipy, python3-six, python3-tornado
Recommends: cnvkit, gsort, libfreetype6, lumpy-sv, mosdepth, multiqc, python3-arrow, python3-geneimpacts, python3-h5py, python3-pyvcf, python3-seqcluster, python3-statsmodels, python3-tabulate, r-other-wasabi, r-bioc-purecn, r-bioc-titancna, seqan-apps, vcfanno, vt
Suggests: bcbio-doc, python3-bioblend, python3-dnapilib, python3-msgpack
Filename: pool/multiverse/b/bcbio/python3-bcbio_1.2.5-1_all.deb
Size: 1228964
MD5sum: d395bd6d45d0d3b2ff8d01bf2a20634a
SHA1: bd9249365dcce7ea7c9ff66ab109c67cf0fe136f
SHA256: e1a2e2f7a18d49e87f06f26aa9ab8577b5624d8f9955c3e2395fa2a482f50c88
SHA512: 19db3efe41db1d11c70abd1db5ee7f97c4f7c01beb031b57d004505e3790cb9ed8831485297855f4ed0dfcd9843ebbd063c99b1620f47c2661251ad6a08a094d
Homepage: https://github.com/bcbio/bcbio-nextgen
Description-en: library for analysing high-throughput sequencing data
This package installs the Python 3 libraries of the bcbio-nextgen
toolkit implementing best-practice pipelines for fully automated high
throughput sequencing analysis.
.
A high-level configuration file specifies inputs and analysis parameters
to drive a parallel pipeline that handles distributed execution,
idempotent processing restarts and safe transactional steps. The project
contributes a shared community resource that handles the data processing
component of sequencing analysis, providing researchers with more time
to focus on the downstream biology.
Description-md5: 9ba9c6a28ef65d1e05ddf9f71cdfb1f9