How to Install and Uninstall alien-hunter Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: December 28,2024

1. Install "alien-hunter" package

This tutorial shows how to install alien-hunter on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                alien-hunter
            
                    
    
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2. Uninstall "alien-hunter" package

This guide covers the steps necessary to uninstall alien-hunter on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                alien-hunter
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the alien-hunter package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: alien-hunter
Priority: optional
Section: universe/science
Installed-Size: 120
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 1.7-3
Depends: libbytecode-java, libbiojava-java, libcommons-cli-java, libcommons-collections3-java, libcommons-dbcp-java, libcommons-pool-java
Suggests: bioperl
Filename: pool/universe/a/alien-hunter/alien-hunter_1.7-3_all.deb
Size: 28014
MD5sum: 76d66e2baac51b82fd80ca5765cc9f1d
SHA1: bf82c3f681835664d00c459b14ebd0af761d38f5
SHA256: 0f2d6fc11a19514c5e744c8cd980686ecbe278017999acb1d8965636df379e5f
Description-en: Interpolated Variable Order Motifs to identify horizontally acquired DNA
Alien_hunter is an application for the prediction of putative
Horizontal Gene Transfer (HGT) events with the implementation of
Interpolated Variable Order Motifs (IVOMs). An IVOM approach
exploits compositional biases using variable order motif distributions
and captures more reliably the local composition of a sequence compared
to fixed-order methods. Optionally the predictions can be parsed into a
2-state 2nd order Hidden Markov Model (HMM), in a change-point detection
framework, to optimize the localization of the boundaries of the
predicted regions. The predictions (embl format) can be automatically
loaded into Artemis genome viewer freely available at:
http://www.sanger.ac.uk/Software/Artemis/.
Description-md5: 5f7c91ddef3ac915fd4f61d66745892f
Homepage: http://www.sanger.ac.uk/resources/software/alien_hunter.html
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu