Complete Guide: Installing profphd on Ubuntu 16.04 LTS (Xenial Xerus) 2024

1. Install "profphd" package

Please follow the step by step instructions below to install profphd on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                profphd
            
                    
    
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2. Uninstall "profphd" package

Please follow the step by step instructions below to uninstall profphd on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                profphd
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the profphd package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: profphd
Priority: extra
Section: universe/science
Installed-Size: 26197
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 1.0.42-1
Replaces: profphd-data, profphd-perl
Depends: perl, librg-utils-perl, profnet-prof, profphd-utils, profphd-net
Recommends: pp-popularity-contest
Conflicts: profphd-data, profphd-perl
Filename: pool/universe/p/profphd/profphd_1.0.42-1_all.deb
Size: 4540450
MD5sum: 695e4c9b0899fe899cacba0d0ff68c64
SHA1: 8ca5f01f02498abf5cf1ddf7980d357f9d9a838a
SHA256: 3704a60d1e0e2974c84431c8ab46412725dd20f9e4c52f278f4046076699fd3e
Description-en: secondary structure and solvent accessibility predictor
This package provides prof(1), the protein secondary structure, accessibility
and transmembrane helix predictor from Burkhard Rost. Prediction is either
done from protein sequence alone or from an alignment - the latter should be
used for optimal performance.
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How well does prof(1) perform?
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* Secondary structure is predicted at an expected average accuracy > 72% for
the three states helix, strand and loop.
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* Solvent accessibility is predicted at a correlation coefficient
(correlation between experimentally observed and predicted relative
solvent accessibility) of 0.54
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* Transmembrane helix prediction has an expected per-residue accuracy of
about 95%. The number of false positives, i.e., transmembrane helices
predicted in globular proteins, is about 2%.
Description-md5: b06e2c53fbcde65fda699c4707780c82
Homepage: http://predictprotein.org/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu