How to Install and Uninstall augustus Package on Kali Linux

Last updated: April 28,2024

1. Install "augustus" package

Please follow the instructions below to install augustus on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                augustus
            
                    
    
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2. Uninstall "augustus" package

Please follow the guidelines below to uninstall augustus on Kali Linux:


    
        
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                sudo apt remove
            
                        
                augustus
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the augustus package on Kali Linux

Package: augustus
Source: augustus (3.5.0+dfsg-4)
Version: 3.5.0+dfsg-4+b1
Installed-Size: 11137
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libboost-iostreams1.83.0 (>= 1.83.0), libc6 (>= 2.34), libcolamd3 (>= 1:7.0.1), libgcc-s1 (>= 3.0), libgsl27 (>= 2.7.1), libhts3 (>= 1.17), libmariadb3 (>= 3.0.0), libmysql++3v5 (>= 3.2.5-1~), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 13.1), augustus-data
Recommends: samtools
Suggests: cdbfasta, diamond-aligner, libfile-which-perl, libparallel-forkmanager-perl, libyaml-perl, libdbd-mysql-perl, python3-biopython
Size: 2090292
SHA256: 967c5407feea009c846f2e769df1a9781640eba80ee977dc82d33dda0dd5d55c
SHA1: b95ecd263208ea244b66bf20f8f546c5c25679cb
MD5sum: ddc220dc3c451b99486160d0e6c9d424
Description: gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
that is based on a generalized hidden Markov model (HMM), a probabilistic
model of a sequence and its gene structure. After learning gene structures
from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
sequence and annotates it with the regions of identified genes. External hints,
e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
and improve the gene finding process. The result is the set of most likely gene
structures that comply with all given user constraints, if such gene
structures exist.
AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
to train custom models using annotated genomes.
Description-md5:
Homepage: https://bioinf.uni-greifswald.de/augustus/
Tag: field::biology, field::biology:bioinformatics, implemented-in::c++,
interface::commandline, role::program, science::calculation,
scope::utility, uitoolkit::ncurses, use::analysing,
works-with::biological-sequence
Section: science
Priority: optional
Filename: pool/main/a/augustus/augustus_3.5.0+dfsg-4+b1_amd64.deb