How to Install and Uninstall augustus Package on Ubuntu 21.10 (Impish Indri)

Last updated: November 07,2024

1. Install "augustus" package

Please follow the steps below to install augustus on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                augustus
            
                    
    
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2. Uninstall "augustus" package

Please follow the guidance below to uninstall augustus on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                augustus
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the augustus package on Ubuntu 21.10 (Impish Indri)

Package: augustus
Architecture: amd64
Version: 3.4.0+dfsg2-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 10312
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcolamd2 (>= 1:4.5.2), libgcc-s1 (>= 3.0), libgsl25 (>= 2.6), libhts3 (>= 1.10), libmysql++3v5 (>= 3.2.5-1~), libmysqlclient21 (>= 8.0.11), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 9), augustus-data
Recommends: samtools
Suggests: cdbfasta, diamond-aligner, libfile-which-perl, libparallel-forkmanager-perl, libyaml-perl, libdbd-mysql-perl, python3-biopython
Filename: pool/universe/a/augustus/augustus_3.4.0+dfsg2-2_amd64.deb
Size: 1948724
MD5sum: 6e4bfb3574a231cfbe859606d7cedb61
SHA1: 0f88fe4aea6ba370c48905565700956884201f9a
SHA256: 757dbf59c4eacbf03007a6419301cbd9b029d4ff52de85b6a621b184d8e6872a
SHA512: e43874c7e6192a4c189c2affba72eca25cc1debbdb673593ad32d2afe6ff660a14ad49060b59b9b0af97009b2d76e9dfe40fbc012efd8781ae5dae7e4a3e4da8
Homepage: https://bioinf.uni-greifswald.de/augustus/
Description-en: gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
that is based on a generalized hidden Markov model (HMM), a probabilistic
model of a sequence and its gene structure. After learning gene structures
from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
sequence and annotates it with the regions of identified genes. External hints,
e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
and improve the gene finding process. The result is the set of most likely gene
structures that comply with all given user constraints, if such gene
structures exist.
AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
to train custom models using annotated genomes.
Description-md5: ab0f2f2c476597fc454d6e64ee4cdcaf