How to Install and Uninstall augustus Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: November 07,2024

1. Install "augustus" package

Please follow the instructions below to install augustus on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                augustus
            
                    
    
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2. Uninstall "augustus" package

This tutorial shows how to uninstall augustus on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                augustus
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the augustus package on Ubuntu 20.10 (Groovy Gorilla)

Package: augustus
Architecture: amd64
Version: 3.3.3+dfsg-3
Built-Using: samtools-legacy (= 0.1.19-4)
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 4943
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.2.3.3), augustus-data
Filename: pool/universe/a/augustus/augustus_3.3.3+dfsg-3_amd64.deb
Size: 1168180
MD5sum: 5daac1f656e9d426a5d95f66e09e4891
SHA1: 13df8832a15be9c7ebc1455edb4ceadc43feb49d
SHA256: 0472724e4c0f1260901bf4a48ed6d77f96416ab633d7b82b0443a855dbcd7d20
SHA512: a8a3bf28f6aff0c721087144b2219296ab86eee46a6a1ebd48fe9969f67dfb18288879b3d1c61681ecbbd8c95d7cc2fa4a10e3dc45961347855620972d4e4294
Homepage: http://bioinf.uni-greifswald.de/augustus/
Description-en: gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
that is based on a generalized hidden Markov model (HMM), a probabilistic
model of a sequence and its gene structure. After learning gene structures
from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
sequence and annotates it with the regions of identified genes. External hints,
e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
and improve the gene finding process. The result is the set of most likely gene
structures that comply with all given user constraints, if such gene
structures exist.
AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
to train custom models using annotated genomes.
Description-md5: ab0f2f2c476597fc454d6e64ee4cdcaf