How to Install and Uninstall bamtools Package on Kali Linux

Last updated: May 18,2024

1. Install "bamtools" package

Please follow the steps below to install bamtools on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                bamtools
            
                    
    
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2. Uninstall "bamtools" package

Please follow the steps below to uninstall bamtools on Kali Linux:


    
        
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                sudo apt remove
            
                        
                bamtools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bamtools package on Kali Linux

Package: bamtools
Version: 2.5.2+dfsg-5
Installed-Size: 670
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libjsoncpp25 (>= 1.9.5), libstdc++6 (>= 13.1)
Size: 206436
SHA256: 35010b97f9cb26bae8b5b1749dbaa54434033a16080f258f071199bb5836d0f9
SHA1: 8394ab49fb8c0f99e6a41bc658faa59dcac455bc
MD5sum: 7ae3512bd23138529de6227c482944c4
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
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BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
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This is the bamtools command-line toolkit.
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Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
Description-md5:
Homepage: https://github.com/pezmaster31/bamtools/wiki
Tag: implemented-in::c++, role::program
Section: science
Priority: optional
Filename: pool/main/b/bamtools/bamtools_2.5.2+dfsg-5_amd64.deb