How to Install and Uninstall bamtools Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: December 29,2024

1. Install "bamtools" package

This tutorial shows how to install bamtools on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                bamtools
            
                    
    
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2. Uninstall "bamtools" package

This is a short guide on how to uninstall bamtools on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                bamtools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bamtools package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: bamtools
Priority: optional
Section: universe/science
Installed-Size: 636
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 2.4.0+dfsg-3build1
Depends: libbamtools2.4.0, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libjsoncpp1, libstdc++6 (>= 5.2)
Filename: pool/universe/b/bamtools/bamtools_2.4.0+dfsg-3build1_amd64.deb
Size: 195994
MD5sum: 40789691cae273b7d14b0d55598d64c2
SHA1: 8847d6d645c10ad1b67b92b93a8cbbd94642ecb6
SHA256: 88bff04e6abd9ff0bb4f6c684118eb9165df4dad2c5f7ac6dde48152f3456059
Description-en: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
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BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
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This is the bamtools command-line toolkit.
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Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
Description-md5: 8806dbb8f096fa9f1dd1e9df2a932d9a
Homepage: https://github.com/pezmaster31/bamtools/wiki
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu