How to Install and Uninstall bamtools Package on Ubuntu 21.10 (Impish Indri)

Last updated: December 23,2024

1. Install "bamtools" package

Please follow the instructions below to install bamtools on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                bamtools
            
                    
    
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2. Uninstall "bamtools" package

This is a short guide on how to uninstall bamtools on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                bamtools
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the bamtools package on Ubuntu 21.10 (Impish Indri)

Package: bamtools
Architecture: amd64
Version: 2.5.1+dfsg-9
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 478
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.14), libgcc-s1 (>= 3.3.1), libjsoncpp24 (>= 1.9.4), libstdc++6 (>= 9)
Filename: pool/universe/b/bamtools/bamtools_2.5.1+dfsg-9_amd64.deb
Size: 150832
MD5sum: 8a53c2338a26adbbe37d2f8bacd92f79
SHA1: e88a123b8f8b1961b9378e2da1a3e7fce13e9c62
SHA256: d4f837cbe1eef3f68cf67494aeab75158ed830e1b91c74c44f13b7b8ae891869
SHA512: 657ed9c257b4fc7644a7383768260fe21a1ac3d6c7d49346dfd1384e476b37bcb643f774f0243941c9839709c98b148b41e2ef461d1a2ca2091f42c5e7922ef0
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description-en: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
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BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
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This is the bamtools command-line toolkit.
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Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
Description-md5: 8806dbb8f096fa9f1dd1e9df2a932d9a