How to Install and Uninstall discosnp Package on Kali Linux

Last updated: November 22,2024

1. Install "discosnp" package

Please follow the steps below to install discosnp on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                discosnp
            
                    
    
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2. Uninstall "discosnp" package

Please follow the step by step instructions below to uninstall discosnp on Kali Linux:


    
        
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                sudo apt remove
            
                        
                discosnp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the discosnp package on Kali Linux

Package: discosnp
Version: 1:2.6.2-3
Installed-Size: 2903
Maintainer: Debian Med Packaging Team
Architecture: amd64
Depends: libc6 (>= 2.34), libgatbcore3 (>= 1.4.2), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6), python3:any, python3, gatb-core
Size: 1455632
SHA256: 92144816765770ce0437dbb3a828e2f7b223199e35ea026fe98fd9f7e8d2118c
SHA1: 914fa227b8783425bf963b0668c4dc4e15dca924
MD5sum: 4e0bcc77d1063f15670a322cac50e7d6
Description: discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide
Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
Sequencers (NGS).
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Note that number of input read sets is not constrained, it can be one, two,
or more. Note also that no other data as reference genome or annotations
are needed.
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The software is composed by two modules. First module, kissnp2, detects SNPs
from read sets. A second module, kissreads, enhance the kissnp2 results by
computing per read set and for each found SNP:
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1) its mean read coverage
2) the (phred) quality of reads generating the polymorphism.
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This program is superseded by DiscoSnp++.
Description-md5:
Homepage: http://colibread.inria.fr/discosnp/
Section: science
Priority: optional
Filename: pool/main/d/discosnp/discosnp_2.6.2-3_amd64.deb