How to Install and Uninstall discosnp Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: May 20,2024

1. Install "discosnp" package

Please follow the guidelines below to install discosnp on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                discosnp
            
                    
    
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2. Uninstall "discosnp" package

This is a short guide on how to uninstall discosnp on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
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                sudo apt remove
            
                        
                discosnp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the discosnp package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: discosnp
Priority: optional
Section: universe/science
Installed-Size: 360
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: amd64
Version: 1.2.6-1
Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.2.3.4), bc, python
Filename: pool/universe/d/discosnp/discosnp_1.2.6-1_amd64.deb
Size: 141446
MD5sum: 26e457d6a996ab6b491b3eed1cd6c49e
SHA1: 47cfe51547191867214348f9c5f06ea984c5b6db
SHA256: 19ad21716d2872bddce2b807395523d731a5d25af615f80306c2d3e8d661eb1f
Description-en: discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide
Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
Sequencers (NGS).
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Note that number of input read sets is not constrained, it can be one, two,
or more. Note also that no other data as reference genome or annotations
are needed.
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The software is composed by two modules. First module, kissnp2, detects SNPs
from read sets. A second module, kissreads, enhance the kissnp2 results by
computing per read set and for each found SNP:
1) its mean read coverage
2) the (phred) quality of reads generating the polymorphism.
Description-md5: 9560a8c75e117168195af92a70065f3f
Homepage: http://colibread.inria.fr/discosnp/
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu