How to Install and Uninstall discosnp Package on Ubuntu 21.04 (Hirsute Hippo)

Last updated: May 19,2024

1. Install "discosnp" package

Please follow the instructions below to install discosnp on Ubuntu 21.04 (Hirsute Hippo)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                discosnp
            
                    
    
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2. Uninstall "discosnp" package

Learn how to uninstall discosnp on Ubuntu 21.04 (Hirsute Hippo):


    
        
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                sudo apt remove
            
                        
                discosnp
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the discosnp package on Ubuntu 21.04 (Hirsute Hippo)

Package: discosnp
Architecture: amd64
Version: 4.4.4-1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2585
Depends: libc6 (>= 2.29), libgatbcore3 (>= 1.4.2+dfsg), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 9), zlib1g (>= 1:1.2.6), python3:any, python3, gatb-core
Filename: pool/universe/d/discosnp/discosnp_4.4.4-1_amd64.deb
Size: 1160600
MD5sum: c942865895aa64ac23de1772c455b0da
SHA1: d511717d0628feb0b5d0374c76464a940cdd9882
SHA256: 903340d273759528af72e0a8d93a31aecb7a93af42093b1cf5c034f932eb78f7
SHA512: 9140dab6c7065db073bda2b443e85de1850a799070bc43ed239ca094ad3c6af0006d5602ac73a9d776fbb0ae928d2aa6847424bdf5c330b80304e4f353d35556
Homepage: http://colibread.inria.fr/discosnp/
Description-en: discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide
Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
Sequencers (NGS).
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Note that number of input read sets is not constrained, it can be one, two,
or more. Note also that no other data as reference genome or annotations
are needed.
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The software is composed by two modules. First module, kissnp2, detects SNPs
from read sets. A second module, kissreads, enhance the kissnp2 results by
computing per read set and for each found SNP:
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1) its mean read coverage
2) the (phred) quality of reads generating the polymorphism.
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This program is superseded by DiscoSnp++.
Description-md5: b7d019a485b07265b1579844c0093c10