How to Install and Uninstall mosdepth-examples Package on Kali Linux

Last updated: May 09,2024

1. Install "mosdepth-examples" package

Learn how to install mosdepth-examples on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                mosdepth-examples
            
                    
    
    Copied

2. Uninstall "mosdepth-examples" package

Please follow the steps below to uninstall mosdepth-examples on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                mosdepth-examples
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the mosdepth-examples package on Kali Linux

Package: mosdepth-examples
Source: mosdepth
Version: 0.3.6+ds-1
Installed-Size: 1024
Maintainer: Debian Med Packaging Team
Architecture: all
Size: 1019992
SHA256: 58f8b42dc0822b865a5bc24de61ce2015ea06048afbb19404cdf4e38b978cc1b
SHA1: 6d81ba998b90e401a32ca64752fc37ffc5214765
MD5sum: bb5e4df6c8903ed0dfbf9d51deac1fbe
Description: Test data for mosdepth
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
.
This package contains a test data set as well as sample scripts
running some test suite provided by Debian also as autopkgtest.
Description-md5:
Multi-Arch: foreign
Homepage: https://github.com/brentp/mosdepth
Section: science
Priority: optional
Filename: pool/main/m/mosdepth/mosdepth-examples_0.3.6+ds-1_all.deb