How to Install and Uninstall mosdepth-examples Package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Last updated: November 25,2024

Deprecated! Installation of this package may no longer be supported.

You can also install and uninstall the mosdepth-examples on the following distributions in the same way, as they are all based on the Ubuntu system

Kubuntu 22.04 LTS
Lubuntu 22.04 LTS
Xubuntu 22.04 LTS
Ubuntu MATE 22.04 LTS
Ubuntu Studio 22.04 LTS
Pop!_OS 22.04 LTS
Zorin OS 16 / Zorin OS 17
Ubuntu Budgie 22.04

1. Install "mosdepth-examples" package

Please follow the instructions below to install mosdepth-examples on Ubuntu 22.04 LTS (Jammy Jellyfish)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                mosdepth-examples
            
                    
    
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2. Uninstall "mosdepth-examples" package

In this section, we are going to explain the necessary steps to uninstall mosdepth-examples on Ubuntu 22.04 LTS (Jammy Jellyfish):


    
        
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                sudo apt remove
            
                        
                mosdepth-examples
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mosdepth-examples package on Ubuntu 22.04 LTS (Jammy Jellyfish)

Package: mosdepth-examples
Architecture: all
Version: 0.3.2+ds-1
Multi-Arch: foreign
Priority: optional
Section: universe/science
Source: mosdepth
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1038
Filename: pool/universe/m/mosdepth/mosdepth-examples_0.3.2+ds-1_all.deb
Size: 1034760
MD5sum: 53d13aa68cb93f3018db08bd6b6e7131
SHA1: 092639896ffe6cbf08031da04c8c879f24619ca0
SHA256: f7a71c4514bc04875f2a3d2341c8c4f753a91e27bbdb8488feb7dcf4f7d4d5cc
SHA512: 617cd0a400f62616fd8e234592c3856693b0d4627c807a4840bee63533e68368e46763d170fb106832acc8e1ecf774112219bf1d4a521f24af9aa7f2b5622e64
Homepage: https://github.com/brentp/mosdepth
Description-en: Test data for mosdepth
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
.
This package contains a test data set as well as sample scripts
running some test suite provided by Debian also as autopkgtest.
Description-md5: 898808e2e4cef87b5990e435edecc708