Complete Guide: Installing mosdepth-examples on Ubuntu 21.10 (Impish Indri) 2024

1. Install "mosdepth-examples" package

This tutorial shows how to install mosdepth-examples on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                mosdepth-examples
            
                    
    
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2. Uninstall "mosdepth-examples" package

This guide let you learn how to uninstall mosdepth-examples on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                mosdepth-examples
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the mosdepth-examples package on Ubuntu 21.10 (Impish Indri)

Package: mosdepth-examples
Architecture: all
Version: 0.3.1+ds-3
Priority: optional
Section: universe/science
Source: mosdepth
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 1038
Filename: pool/universe/m/mosdepth/mosdepth-examples_0.3.1+ds-3_all.deb
Size: 1034522
MD5sum: 76be09e4bdfad90c20b872f7f006d2ef
SHA1: 79e7c497e39fb39d5cd9d99e6333cd8db7cab868
SHA256: be36e56e90d6930ed95938ebaf04d3993115aabea73dcb236b3c5a81fa2a2e53
SHA512: 71c5e4da6f5aacc95582f5d14b26f5f89910836eb7469f7a331ee05ce9b0268962049e446f6daab07d7523965774f64c183d7dd72d36040044ee6c925b85448c
Homepage: https://github.com/brentp/mosdepth
Description-en: Test data for mosdepth
Many small reads are produced by high-throughput "next generation"
sequencing technologies. The final sequence is derived from how
these reads are overlapping towards a consensus.
The more reads are covering/confirming parts of a nucleotide seq,
the higher the confidence is. Too many reads would be indicative
of e.g. repeats in the genome.
.
mosdepth can output:
* per-base depth about 2x as fast samtools depth--about 25 minutes
of CPU time for a 30X genome.
* mean per-window depth given a window size--as would be used for
CNV calling.
* the mean per-region given a BED file of regions.
* a distribution of proportion of bases covered at or above a given
threshold for each chromosome and genome-wide.
* quantized output that merges adjacent bases as long as they fall
in the same coverage bins e.g. (10-20)
* threshold output to indicate how many bases in each region are
covered at the given thresholds.
when appropriate, the output files are bgzipped and indexed for ease
of use.
.
This package contains a test data set as well as sample scripts
running some test suite provided by Debian also as autopkgtest.
Description-md5: 898808e2e4cef87b5990e435edecc708