How to Install and Uninstall r-cran-alakazam Package on Kali Linux

Last updated: November 26,2024

1. Install "r-cran-alakazam" package

This tutorial shows how to install r-cran-alakazam on Kali Linux


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                r-cran-alakazam
            
                    
    
    Copied

2. Uninstall "r-cran-alakazam" package

Please follow the steps below to uninstall r-cran-alakazam on Kali Linux:


    
        
            $
        

        
            
                sudo apt remove
            
                        
                r-cran-alakazam
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the r-cran-alakazam package on Kali Linux

Package: r-cran-alakazam
Version: 1.3.0-1
Installed-Size: 2845
Maintainer: Debian R Packages Maintainers
Architecture: amd64
Depends: r-api-4.0, r-cran-ggplot2 (>= 3.4.0), r-cran-airr (>= 1.4.1), r-cran-ape, r-cran-dplyr (>= 1.0), r-cran-igraph (>= 1.5.0), r-cran-matrix (>= 1.3-0), r-cran-progress, r-cran-rcpp (>= 0.12.12), r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0), r-bioc-biostrings (>= 2.56.0), r-bioc-genomicalignments (>= 1.24.0), r-bioc-iranges (>= 2.22.2), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Size: 2418640
SHA256: b54192daadfec052475cc2e0ea0dd73b7a4708edd14124f42d32c7ca9dd9d846
SHA1: 79f2a493c8072edc4b72326e3c2cebcccfcd39f1
MD5sum: 9614d9920e221c59d1f82d5015988529
Description: Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive
Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of
tools to investigate lymphocyte receptor clonal lineages, diversity,
gene usage, and other repertoire level properties, with a focus on
high-throughput immunoglobulin (Ig) sequencing.
.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation
framework. This includes common tasks such as file I/O, basic DNA
sequence manipulation, and interacting with V(D)J segment and gene
annotations.
* Providing an R interface for interacting with the output of the
pRESTO and Change-O tool suites.
* Performing lineage reconstruction on clonal populations of Ig
sequences and analyzing the topology of the resultant lineage trees.
* Performing clonal abundance and diversity analysis on lymphocyte
repertoires.
* Performing physicochemical property analyses of lymphocyte receptor
sequences.
Description-md5:
Homepage: https://cran.r-project.org/package=alakazam
Section: science
Priority: optional
Filename: pool/main/r/r-cran-alakazam/r-cran-alakazam_1.3.0-1_amd64.deb