How to Install and Uninstall r-cran-alakazam Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 04,2024

1. Install "r-cran-alakazam" package

Please follow the instructions below to install r-cran-alakazam on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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            $
        

        
            
                sudo apt install
            
                        
                r-cran-alakazam
            
                    
    
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2. Uninstall "r-cran-alakazam" package

In this section, we are going to explain the necessary steps to uninstall r-cran-alakazam on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                r-cran-alakazam
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the r-cran-alakazam package on Ubuntu 21.10 (Impish Indri)

Package: r-cran-alakazam
Architecture: amd64
Version: 1.1.0-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2943
Depends: r-base-core (>= 4.0.4-1), r-api-4.0, r-cran-ggplot2 (>= 3.2.0), r-cran-airr, r-cran-ape, r-bioc-biostrings, r-cran-dplyr (>= 1.0), r-bioc-genomicalignments, r-cran-igraph (>= 1.0.0), r-bioc-iranges, r-cran-lazyeval, r-cran-matrix, r-cran-progress, r-cran-rcpp (>= 0.12.12), r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0.0), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Filename: pool/universe/r/r-cran-alakazam/r-cran-alakazam_1.1.0-1_amd64.deb
Size: 2542224
MD5sum: 5fec85761ac5a40d234535898b1a4382
SHA1: 47def379c15bf0f728610568587458f8bfd91fb6
SHA256: 2e1ac3bdd717e60829264c8e45d74bf92ab59e128b12ca8470fdcfcfa8c5f6a2
SHA512: a15fbb7ba36836877fce6f335461548b7131fbc844cdaaaad5faf52db6e02c6b233e5e24e82e3c3f145c92c2a9647a24400df41b4f15d6a086d8f43ad9a6bf17
Homepage: https://cran.r-project.org/package=alakazam
Description-en: Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive
Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of
tools to investigate lymphocyte receptor clonal lineages, diversity,
gene usage, and other repertoire level properties, with a focus on
high-throughput immunoglobulin (Ig) sequencing.
.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation
framework. This includes common tasks such as file I/O, basic DNA
sequence manipulation, and interacting with V(D)J segment and gene
annotations.
* Providing an R interface for interacting with the output of the
pRESTO and Change-O tool suites.
* Performing lineage reconstruction on clonal populations of Ig
sequences and analyzing the topology of the resultant lineage trees.
* Performing clonal abundance and diversity analysis on lymphocyte
repertoires.
* Performing physicochemical property analyses of lymphocyte receptor
sequences.
Description-md5: c45777de915a621510a4858171115aa0