How to Install and Uninstall r-cran-alakazam Package on Ubuntu 20.10 (Groovy Gorilla)

Last updated: April 28,2024

1. Install "r-cran-alakazam" package

Please follow the steps below to install r-cran-alakazam on Ubuntu 20.10 (Groovy Gorilla)


    
        
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                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                r-cran-alakazam
            
                    
    
    Copied

2. Uninstall "r-cran-alakazam" package

Please follow the steps below to uninstall r-cran-alakazam on Ubuntu 20.10 (Groovy Gorilla):


    
        
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                sudo apt remove
            
                        
                r-cran-alakazam
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the r-cran-alakazam package on Ubuntu 20.10 (Groovy Gorilla)

Package: r-cran-alakazam
Architecture: amd64
Version: 1.0.2-1
Priority: optional
Section: universe/gnu-r
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian R Packages Maintainers
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 2256
Depends: r-base-core (>= 4.0.2-1build1), r-api-4.0, r-cran-ggplot2 (>= 3.2.0), r-cran-ape, r-cran-dplyr (>= 0.8.3), r-cran-igraph (>= 1.0.0), r-cran-lazyeval, r-cran-matrix, r-cran-progress, r-cran-rcpp (>= 0.12.12), r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0.0), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Filename: pool/universe/r/r-cran-alakazam/r-cran-alakazam_1.0.2-1_amd64.deb
Size: 1905664
MD5sum: c7337b6d8f8308f7b68b0c63b3dbbc83
SHA1: a53774d42d160d09972d81360d84bee31e16f0b0
SHA256: fddb36f9b5177bd8cc72db3924667304b5549c543caa0de9b5b8ff31712e5773
SHA512: 07f425e3fded47eaf8c587d78107e76ac4d2c070c161c8563cc90c7fa7a61a6a8c9e6a63ba9719add73ef76ab2b5135410dc6502646a4cc9be9c59717b9bddf0
Homepage: https://cran.r-project.org/package=alakazam
Description-en: Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive
Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of
tools to investigate lymphocyte receptor clonal lineages, diversity,
gene usage, and other repertoire level properties, with a focus on
high-throughput immunoglobulin (Ig) sequencing.
.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation
framework. This includes common tasks such as file I/O, basic DNA
sequence manipulation, and interacting with V(D)J segment and gene
annotations.
* Providing an R interface for interacting with the output of the
pRESTO and Change-O tool suites.
* Performing lineage reconstruction on clonal populations of Ig
sequences and analyzing the topology of the resultant lineage trees.
* Performing clonal abundance and diversity analysis on lymphocyte
repertoires.
* Performing physicochemical property analyses of lymphocyte receptor
sequences.
Description-md5: c45777de915a621510a4858171115aa0