How to Install and Uninstall trimmomatic Package on Kali Linux

Last updated: November 22,2024

1. Install "trimmomatic" package

Please follow the guidelines below to install trimmomatic on Kali Linux


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                trimmomatic
            
                    
    
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2. Uninstall "trimmomatic" package

Please follow the guidelines below to uninstall trimmomatic on Kali Linux:


    
        
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                sudo apt remove
            
                        
                trimmomatic
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the trimmomatic package on Kali Linux

Package: trimmomatic
Version: 0.39+dfsg-2
Installed-Size: 785
Maintainer: Debian Med Packaging Team
Architecture: all
Depends: libjbzip2-java, default-jre
Size: 757892
SHA256: 7380e4dd12dfa4ea9d6df82a326e3a9dde007c1a33e1520df3ac710f83f53c8e
SHA1: 7a71cd999d6ecd9dfb798268ff04430d4eeab150
MD5sum: b84812e99e5537b5e81c56a468c0d8a9
Description: flexible read trimming tool for Illumina NGS data
Trimmomatic performs a variety of useful trimming tasks for illumina
paired-end and single ended data.The selection of trimming steps and
their associated parameters are supplied on the command line.
.
The current trimming steps are:
* ILLUMINACLIP: Cut adapter and other illumina-specific sequences from
the read.
* SLIDINGWINDOW: Perform a sliding window trimming, cutting once thes
average quality within the window falls below a threshold.
* LEADING: Cut bases off the start of a read, if below a threshold quality
* TRAILING: Cut bases off the end of a read, if below a threshold quality
* CROP: Cut the read to a specified length
* HEADCROP: Cut the specified number of bases from the start of the read
* MINLENGTH: Drop the read if it is below a specified length
* TOPHRED33: Convert quality scores to Phred-33
* TOPHRED64: Convert quality scores to Phred-64
It works with FASTQ (using phred + 33 or phred + 64 quality scores,
depending on the Illumina pipeline used), either uncompressed or
gzipp'ed FASTQ. Use of gzip format is determined based on the .gz
extension.
Description-md5:
Homepage: http://www.usadellab.org/cms/index.php?page=trimmomatic
Section: science
Priority: optional
Filename: pool/main/t/trimmomatic/trimmomatic_0.39+dfsg-2_all.deb