How to Install and Uninstall trimmomatic Package on Ubuntu 21.10 (Impish Indri)

Last updated: May 18,2024

1. Install "trimmomatic" package

This tutorial shows how to install trimmomatic on Ubuntu 21.10 (Impish Indri)


    
        
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                sudo apt update
            
                    
    
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                sudo apt install
            
                        
                trimmomatic
            
                    
    
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2. Uninstall "trimmomatic" package

In this section, we are going to explain the necessary steps to uninstall trimmomatic on Ubuntu 21.10 (Impish Indri):


    
        
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                sudo apt remove
            
                        
                trimmomatic
            
                    
    
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                sudo apt autoclean && sudo apt autoremove
            
                    
    
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3. Information about the trimmomatic package on Ubuntu 21.10 (Impish Indri)

Package: trimmomatic
Architecture: all
Version: 0.39+dfsg-2
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 785
Depends: libjbzip2-java, default-jre
Filename: pool/universe/t/trimmomatic/trimmomatic_0.39+dfsg-2_all.deb
Size: 757584
MD5sum: eeb480a60cdf358731834dd2a2214670
SHA1: 12f10f9ef82b8da06e51999eec386cbccc26ba1f
SHA256: 156d41df954faa855e3e648218f7126db934e1cc7275bcb0ab5c0940de808229
SHA512: 993d32e738e66da9f984a9feaf7d8e65154921030eb6084646cf6a1590c00b666ad8f3bba0fd99227c6b10dbc9d889eaffbf8b5235abce0efff948484b3c3c3d
Homepage: http://www.usadellab.org/cms/index.php?page=trimmomatic
Description-en: flexible read trimming tool for Illumina NGS data
Trimmomatic performs a variety of useful trimming tasks for illumina
paired-end and single ended data.The selection of trimming steps and
their associated parameters are supplied on the command line.
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The current trimming steps are:
* ILLUMINACLIP: Cut adapter and other illumina-specific sequences from
the read.
* SLIDINGWINDOW: Perform a sliding window trimming, cutting once thes
average quality within the window falls below a threshold.
* LEADING: Cut bases off the start of a read, if below a threshold quality
* TRAILING: Cut bases off the end of a read, if below a threshold quality
* CROP: Cut the read to a specified length
* HEADCROP: Cut the specified number of bases from the start of the read
* MINLENGTH: Drop the read if it is below a specified length
* TOPHRED33: Convert quality scores to Phred-33
* TOPHRED64: Convert quality scores to Phred-64
It works with FASTQ (using phred + 33 or phred + 64 quality scores,
depending on the Illumina pipeline used), either uncompressed or
gzipp'ed FASTQ. Use of gzip format is determined based on the .gz
extension.
Description-md5: fb8a901542618dcc98ce51bd3dfb107e