How to Install and Uninstall trimmomatic Package on Ubuntu 16.04 LTS (Xenial Xerus)

Last updated: November 07,2024

1. Install "trimmomatic" package

This guide covers the steps necessary to install trimmomatic on Ubuntu 16.04 LTS (Xenial Xerus)


    
        
            $
        

        
            
                sudo apt update
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt install
            
                        
                trimmomatic
            
                    
    
    Copied

2. Uninstall "trimmomatic" package

This is a short guide on how to uninstall trimmomatic on Ubuntu 16.04 LTS (Xenial Xerus):


    
        
            $
        

        
            
                sudo apt remove
            
                        
                trimmomatic
            
                    
    
    Copied


    
        
            $
        

        
            
                sudo apt autoclean && sudo apt autoremove
            
                    
    
    Copied

3. Information about the trimmomatic package on Ubuntu 16.04 LTS (Xenial Xerus)

Package: trimmomatic
Priority: optional
Section: universe/science
Installed-Size: 151
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Architecture: all
Version: 0.35+dfsg-1
Depends: libjbzip2-java, default-jre
Filename: pool/universe/t/trimmomatic/trimmomatic_0.35+dfsg-1_all.deb
Size: 113964
MD5sum: 78e785e1dc68915bf5b4bc4572746d97
SHA1: 8eba5116f1e477bf5c6256b3a0645ef6b19cb28d
SHA256: 8d7005f45fe64f6b10b885c413e095d15027dc155262f61f71b094314ebbc1b8
Description-en: flexible read trimming tool for Illumina NGS data
Trimmomatic performs a variety of useful trimming tasks for illumina
paired-end and single ended data.The selection of trimming steps and
their associated parameters are supplied on the command line.
.
The current trimming steps are:
* ILLUMINACLIP: Cut adapter and other illumina-specific sequences from
the read.
* SLIDINGWINDOW: Perform a sliding window trimming, cutting once thes
average quality within the window falls below a threshold.
* LEADING: Cut bases off the start of a read, if below a threshold quality
* TRAILING: Cut bases off the end of a read, if below a threshold quality
* CROP: Cut the read to a specified length
* HEADCROP: Cut the specified number of bases from the start of the read
* MINLENGTH: Drop the read if it is below a specified length
* TOPHRED33: Convert quality scores to Phred-33
* TOPHRED64: Convert quality scores to Phred-64
It works with FASTQ (using phred + 33 or phred + 64 quality scores,
depending on the Illumina pipeline used), either uncompressed or
gzipp'ed FASTQ. Use of gzip format is determined based on the .gz
extension.
Description-md5: fb8a901542618dcc98ce51bd3dfb107e
Homepage: http://www.usadellab.org/cms/index.php?page=trimmomatic
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Origin: Ubuntu