jellyfish on Ubuntu 20.04 LTS (Focal Fossa)

Last updated: May 26,2022

1. Install jellyfish package

Please follow the instructions below to install jellyfish package:

sudo apt update
sudo apt install jellyfish

2. Uninstall / Remove jellyfish package

Please follow the instructions below to uninstall jellyfish package:

sudo apt remove jellyfish
sudo apt autoclean && sudo apt autoremove

3. Details of jellyfish package

Package: jellyfish
Architecture: amd64
Version: 2.3.0-4build1
Priority: optional
Section: universe/science
Origin: Ubuntu
Maintainer: Ubuntu Developers
Original-Maintainer: Debian Med Packaging Team
Bugs: https://bugs.launchpad.net/ubuntu/+filebug
Installed-Size: 631
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libjellyfish-2.0-2 (= 2.3.0-4build1), libstdc++6 (>= 9)
Filename: pool/universe/j/jellyfish/jellyfish_2.3.0-4build1_amd64.deb
Size: 361068
MD5sum: 9ef18514a55506163935f998ee816f1a
SHA1: af573818eef8f6e0490eed7c2a100353ea5b58ab
SHA256: 266b44a7892bd390c5576f09734ffccd762f362233374cc4dc7594b329b90ce6
Homepage: https://www.cbcb.umd.edu/software/jellyfish/
Description-en: count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
Description-md5: 33c2d211a341ae9429c6f8ced355efd0